Update on my NICS denial. I finally received my letter stating the reason for the denial. It seems I am a fugitive.

I am anxiously awaiting the knock on the door.

I did a DPS criminal search and found three with my same first and last name and one that is within a year of my dob and roughly fits my description. Now, based on this forums comments and my NICS letter I totally believe NICS is a name and description based system. Middle names and SSNs do not appear to influence them at all. I gave my SSN and my middle name is different. I guess this is good news since it should be a relatively simple process of proving I am not a fugitive.
Now, regarding my permanent protective orders in my 10 year old divorce decree. Mr. Cotton has been encouraging with this. The language is only a separation order, nothing about violence, harrassment, threats, thou shalt nots, etc. just stay away from each other. There was no threat or mention of violence. I've read two diffenent sources stating that these permanent orders expire after 2 years. So...they are expired and should not impact obtaining my CHL. If for some reason this is an issue I should be able to have the ex sign a letter requesting the ppo be set aside since she's been in violation for 8 years by working in the same building 200 feet away from me. I was here first so she is in contempt of court and could be arrested.
Where i stand today. I've applied for my CHL online and had my L-1 prints submitted. I'm going to stop there until I am cleared by NICS. I'm completing the NICS appeal tonight and will contact the local PD to be fingerprinted. NICS says they don't take electronic fingerprint submissions and L-1 says they don't print them. L-1 was not even familiar with NICS. Once NICS is happy, I'll go purchase my M&P 9, sign up for CHL class, and complete the process.
Sounds simple!
Oh yeah, probably go the UPIN route too so this does not happen again. Thanks for all the responses and Charles, you may be hearing from me again if this doesn't go as I hope.